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AMET Data Analysis

Atmospheric Model Evaluation Tool (AMET)

Installation Notes

  • Location: /home/AMET/AMET_v13
  • Installation Command:Command for AMET: 

  git clone -b 1.3 https://github.com/USEPA/AMET.git AMET_v13

  • Upgrade R to the latest version:
    • sudo yum install R
 R > install.packages(c("RMySQL", "date", "maps", "mapdata","stats","plotrix", "Fields")) 1: packages 'stats', 'Fields' are not available (for R version 3.4.1) 2: package 'stats' is a base package, and should not be updated

  • Install required R packages for AMET
    • R
> install.packages(c("RMySQL", "date", "maps", "mapdata","stats","plotrix", "fields"))

  • Manual install of ncdf4 for R

wget http://cirrus.ucsd.edu/pierce/ncdf/ncdf4_1.13.tar.gz
 http://cirrus.ucsd.edu/~pierce/ncdf/ncdf4_1.13.tar.gz
sudo R CMD INSTALL ncdf4_1.13.tar.gz

set

  • Set AMETBASE and username/pass in /home/AMET/AMET_v13/configure/amet-config.R
  • Create the AMET user ametiwdw (only needs to be done once)
    • cd /home/AMET/AMET_v13/scripts_db/dbSetup
./create_amet_user.csh
user: ametiwdw
pass: winter********

  • Run the AMET test case
    • cd /home/AMET/AMET_v13/scripts_db/dbSetup
 ./create_amet_user.csh/home/AMET/AMET_v13/scripts_analysis/aqExample
./run_AMET_batch_scripts.csh
    Note: user:there ametiwdwwas pass:a winter******

    small bug in the AMET script input_files/Network.input that I fixed.