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AMET Data Analysis

Atmospheric Model Evaluation Tool (AMET)

Installation Notes

Location: /home/AMET/AMET_v13
Installation Command for AMET:

  git clone -b 1.3 https://github.com/USEPA/AMET.git AMET_v13

Upgrade R to the latest version:

sudo yum install R

Install required R packages for AMET

sudo R
> install.packages(c("RMySQL", "date", "maps", "mapdata","stats","plotrix", "fields"))

Manual install of ncdf4 for R

wget http://cirrus.ucsd.edu/~pierce/ncdf/ncdf4_1.13.tar.gz
sudo R CMD INSTALL ncdf4_1.13.tar.gz

Set AMETBASE and username/pass in /home/AMET/AMET_v13/configure/amet-config.R
Create the AMET user ametiwdw (only needs to be done once)

cd /home/AMET/AMET_v13/scripts_db/dbSetup
./create_amet_user.csh
user: ametiwdw
pass: winter********

Run the AMET test case

cd /home/AMET/AMET_v13/scripts_analysis/aqExample
./run_AMET_batch_scripts.csh