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AMET Data Analysis

Atmospheric Model Evaluation Tool (AMET)

Installation Notes

  • Location: /home/AMET/AMET_v13
  • Installation Command for AMET:
  •   git clone -b 1.3 https://github.com/USEPA/AMET.git AMET_v13
    

  • Upgrade R to the latest version:
  • sudo yum install R
    

  • Install required R packages for AMET
  • R
    > install.packages(c("RMySQL", "date", "maps", "mapdata","stats","plotrix", "fields"))
    

  • Manual install of ncdf4 for R

wget http://cirrus.ucsd.edu/~pierce/ncdf/ncdf4_1.13.tar.gz
sudo R CMD INSTALL ncdf4_1.13.tar.gz

  • Set AMETBASE and username/pass in /home/AMET/AMET_v13/configure/amet-config.R
  • Create the AMET user ametiwdw (only needs to be done once)
  • cd /home/AMET/AMET_v13/scripts_db/dbSetup
    ./create_amet_user.csh
    user: ametiwdw
    pass: winter********
    

  • Run the AMET test case
  • cd /home/AMET/AMET_v13/scripts_analysis/aqExample
    ./run_AMET_batch_scripts.csh
    
    Note: there was a small bug in the AMET script input_files/Network.input that I fixed.